PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003259m
Common NameCARUB_v10003259mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 479aa    MW: 53077.8 Da    PI: 4.5705
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003259mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35261182103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d++++e++sws+ +nsfvv+   ef+k +LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+
  Carubv10003259m  26 FLSKTYDMVDDPSTNEVVSWSSGNNSFVVWSVPEFSKVLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKQLLK 110
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                       i r+ks+
  Carubv10003259m 111 GIVRRKSS 118
                      *****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-3821109IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-3421115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-5822115IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3026115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MEPVPESVPS ANSPSIPPPV NSVPPFLSKT YDMVDDPSTN EVVSWSSGNN SFVVWSVPEF  60
SKVLLPKYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKQLLK GIVRRKSSHV  120
QQNQQQTQVR NSSAGACVEV GKFGLEEEVE RLKRDKNVLM QELVRLRQQQ QVTENQLQNV  180
GQKVQVMEQR QQQMMSFLAK AVQSPGFLNQ LVQQNNDGSR QIPGSNKKRR LSGDEQENCG  240
SHGADGLNRQ IVKYQPSINE AAQNMLRQFL NTSTTPQYEP VSNSSDSFLL GDVPSSNSVD  300
NGNPSNRVTL AEVSPNTSHS VTNQVPEVYL AHHPQAGLVQ PILSSSPAQG VVPTASWSPE  360
SDLVGCETGN GECFDPIMAA LDVFEGEAIS PEGEGKMNEL LDGVSKLPGV QDPFWEQFFD  420
DGSQAIGDTD EILSGSVENN DLVMEQEQPT TNEWTRNQQQ MNYLTEQMGL LSSEAQRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-262111815123Heat shock factor protein 1
5d5v_D7e-26911518129Heat shock factor protein 1
5d5v_B7e-26911518129Heat shock factor protein 1
5d5u_B7e-26911518129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY140680.0Y14068.1 Arabidopsis thaliana mRNA for heat shock factor 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289698.10.0hypothetical protein CARUB_v10003259mg
SwissprotO818210.0HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLR0FKX10.0R0FKX1_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.6__1675__AT5G16820.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.20.0heat shock factor 3